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![[TXT]](/icons/text.gif){kind=icon}
![[DIR]](/icons/folder.gif){kind=icon}
| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| aligner.h | 2019-03-08 07:30 | 64K | |
| aligner_0mm.h | 2019-03-08 07:30 | 11K | |
| aligner_1mm.h | 2019-03-08 07:30 | 15K | |
| aligner_23mm.h | 2019-03-08 07:30 | 24K | |
| aligner_metrics.h | 2015-03-09 09:50 | 10K | |
| alphabet.cpp | 2015-03-09 09:51 | 11K | |
| alphabet.h | 2015-03-09 09:50 | 5.6K | |
| annot.cpp | 2015-03-09 09:50 | 535 | |
| annot.h | 2015-03-09 09:50 | 1.1K | |
| assert_helpers.h | 2015-03-09 09:50 | 8.6K | |
| bitset.h | 2015-06-16 12:12 | 11K | |
| blockwise_sa.h | 2019-03-08 07:30 | 29K | |
| bowtie_build_main.cpp | 2015-03-09 09:50 | 1.4K | |
| bowtie_inspect.cpp | 2015-03-09 09:50 | 15K | |
| btypes.h | 2015-03-09 09:50 | 627 | |
| chaincat.cpp | 2015-03-09 09:50 | 638 | |
| color.cpp | 2015-03-09 09:50 | 2.0K | |
| color_dec.h | 2015-03-09 09:50 | 1.0K | |
| diff_sample.h | 2019-03-08 07:30 | 30K | |
| ebwt.h | 2015-03-09 09:51 | 151K | |
| ebwt_build.cpp | 2015-03-09 09:51 | 23K | |
| ebwt_search.cpp | 2019-03-08 07:30 | 105K | |
| ebwt_search.h | 2015-06-16 12:12 | 1.9K | |
| ebwt_search_backtrack.h | 2019-03-08 07:30 | 102K | |
| ebwt_search_util.h | 2015-06-16 12:12 | 12K | |
| edit.cpp | 2015-03-09 09:50 | 236 | |
| edit.h | 2015-03-09 09:50 | 1.8K | |
| filebuf.h | 2015-03-09 09:50 | 12K | |
| formats.h | 2015-03-09 09:50 | 1.0K | |
| hit.cpp | 2015-03-09 09:50 | 8.8K | |
| hit.h | 2015-06-16 12:12 | 48K | |
| hit_set.h | 2015-03-09 09:50 | 9.4K | |
| log.h | 2015-06-16 12:12 | 373 | |
| multikey_qsort.h | 2015-03-09 09:51 | 35K | |
| pat.cpp | 2015-03-09 09:50 | 4.0K | |
| pat.h | 2019-03-08 07:30 | 86K | |
| pool.h | 2019-03-08 07:30 | 8.4K | |
| random_source.h | 2015-03-09 09:51 | 1.4K | |
| range_cache.h | 2015-03-09 09:50 | 15K | |
| range_chaser.h | 2015-03-09 09:50 | 7.3K | |
| range_source.h | 2019-03-08 07:30 | 69K | |
| ref_read.h | 2015-03-09 09:50 | 7.6K | |
| reference.h | 2015-03-09 09:51 | 23K | |
| refmap.cpp | 2015-03-09 09:51 | 1.4K | |
| refmap.h | 2015-03-09 09:50 | 1.1K | |
| row_chaser.h | 2015-03-09 09:50 | 4.6K | |
| sam.cpp | 2015-03-09 09:50 | 11K | |
| sam.h | 2015-03-09 09:50 | 4.9K | |
| search_1mm_phase2.c | 2015-03-09 09:50 | 878 | |
| search_23mm_phase1.c | 2015-03-09 09:51 | 1.3K | |
| search_23mm_phase2.c | 2015-03-09 09:50 | 1.1K | |
| search_23mm_phase3.c | 2015-03-09 09:50 | 1.7K | |
| search_exact.c | 2015-03-09 09:50 | 746 | |
| search_globals.h | 2015-03-09 09:51 | 470 | |
| search_seeded_phase1.c | 2015-03-09 09:51 | 2.3K | |
| search_seeded_phase2.c | 2015-03-09 09:50 | 2.9K | |
| search_seeded_phase3.c | 2015-03-09 09:50 | 4.3K | |
| third_party/ | 2015-06-23 10:33 | - | |
| threading.h | 2015-06-16 12:12 | 1.0K | |
| timer.h | 2015-03-09 09:50 | 1.6K | |
| word_io.h | 2015-03-09 09:50 | 2.5K | |
| zbox.h | 2015-03-09 09:51 | 1.9K | |